Virginia Tech   Pseudomonas Syringae Assemblies Project Virginia Bioinformatics Institute

Choose genomes to see OrthoMCL families containing genes from them

The question this tool can answer is like that:

'I want to see all protein families that contain at least one protein of genome A, at least one protein of genome B,
and NO proteins of genome C. The families may or not contain genes of genome D or E (I don't care about D or E).'
In other words: 'I want to see all proteins present in genomes A and genome B that are not present in C, no matter if
they are present in genomes D or E.'
For this question, you should choose: include genome A; include genome B; exclude genome C; dont care about D;
and dont care about E.
  Include    Exclude  Don't care
Pal_BS91 nt sequences
Pal_T3C nt sequences
Pan_126 nt sequences
Pma_ES4326 nt sequences
Pma_F1 nt sequences
Pma_M3 nt sequences
Pma_M6 nt sequences
Pto_JL1065 nt sequences
Pto_kuzzen40 nt sequences
Pto_Max13 nt sequences
Pto_NCPPB1108 nt sequences
Pto_T1 nt sequences
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae tomato DC3000
Pseudomonas fluorescens Pf-5
Pseudomonas fluorescens Pf0-1
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check all
 
check all
(see all families)
Don't show me genes of "Don't Care" genomes