Program blastp blastn blastx tblastn tblastx Database P. syringae pto T1 genes (nt) P. syringae phaseolicola 1448A genes (nt) P. syringae pv B728a genes (nt) P. syringae tomato DC3000 genes (nt) All four P. syringae genes (nt) ------------ P. syringae pto T1 genes (aa) P. syringae phaseolicola 1448A genes (aa) P. syringae pv B728a genes (aa) P. syringae tomato DC3000 genes (aa) All four P. syringae genes (aa) ------------ Psy642 contigs (nt) Ptokuzzen40 contigs (nt) PtoMax13 contigs (nt) PtoNCPPB1108 contigs (nt) All of the above contigs (nt) ------------ Psy642 Studholme assembly (nt) PtoMax13 Studholme assembly (nt) ------------ Xanthomonas non-redundant loci (nt) ------------ [New assemblies] Pal BS91 contigs (nt) Pal T3C contigs (nt) Pan 126 contigs (nt) Pcan BS0968 contigs (nt) Pma ES4326 contigs (nt) Pma F1 contigs (nt) Pma M3 contigs (nt) Pma M6 contigs (nt) Pto JL1065 contigs (nt) Pto kuzzen40 contigs (nt) Pto Max13 contigs (nt) Pto Max4 contigs (nt) Pto NCPPB1108 contigs (nt) ------------ [new assemblies -- annotation] Pal_BS91 (aa) Pal_T3C (aa) Pan_126 (aa) Pma_ES4326 (aa) Pma_F1 (aa) Pma_M3 (aa) Pma_M6 (aa) Pto_JL1065 (aa) Pto_kuzzen40 (aa) Pto_Max13 (aa) Pto_NCPPB1108 (aa) ------------ PtoT1 contigs (nt) P. syringae tomato DC3000 replicons (nt) ------------ [September 2010 - NCBI WGS compliant version] Pto1108 NCBI WGS (nt) PtoK40 NCBI WGS (nt) PtoMax13 NCBI WGS (nt) PtoMax4 NCBI WGS (nt) ------------ [September 2011] CFBP1318.supercontigs (nt) Col198.supercontigs (nt) DC06T1.supercontigs (nt) GC19.supercontigs (nt) PT21.supercontigs (nt) SM78-1.supercontigs (nt) Col196 supercontigs (nt) Pto_DC08T1 (nt) Pto_KSP53 (nt) ------------
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From       To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options: